Patch supplied by the bug reporter, tidied up by me.
$ ./configure --with-ghc=$HOME/fp/bin/i386-unknown-linux/ghc --build=x86_64-unknown-linux
checking for gfind... no
checking for find... /usr/bin/find
checking for sort... /usr/bin/sort
checking for GHC version date... inferred 7.1.
20110107
checking version of ghc... 7.0.1
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
Host platform inferred as: i386-unknown-linux
Target platform inferred as: i386-unknown-linux
This GHC (/home/simonmar/fp/bin/i386-unknown-linux/ghc) does not generate code for the build platform
GHC target platform : i386-unknown-linux
Desired build platform : x86_64-unknown-linux
checkVendor "$TargetVendor"
checkOS "$TargetOS"
+# Verify that the installed (bootstrap) GHC is capable of generating
+# code for the requested build platform.
+if test "$build" != "$bootstrap_target"
+then
+ echo "This GHC (${WithGhc}) does not generate code for the build platform"
+ echo " GHC target platform : $bootstrap_target"
+ echo " Desired build platform : $BuildPlatform"
+ exit 1
+fi
+
AC_SUBST(BuildPlatform)
AC_SUBST(HostPlatform)
AC_SUBST(TargetPlatform)